Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015891258.1_cds_XP_016446017.1_40918
CDS Infomation

[gene=LOC107771189] [db_xref=GeneID:107771189] [protein=pentatricopeptide repeat-containing protein At1g10270-like isoform X3] [protein_id=XP_016446017.1] [location=join(148132..149926,150244..150360,150445..150528,150613..151412)] [gbkey=CDS]
Sequence

ATGTCACTCTATGGCATCCTCCTCCGCTCTCTCCGCCGTTCGTCCGCCGCCGTCAGACCT
CAAATCACGCCATCCGTTTACCCTCACCCAACACCACAACCACCACCTCCTCAAAACCCT
AACTTCCTTCTCCCTCAGCGATCATACGCATTTTCCTCAGCCGAAGAAGCCGCCGCTGAA
CGCCGCCGTCGCAAGCGCCGCCTCCGTATTGAACCGCCAATCAACGCCCTCCGTCGTGAT
CCACTCCCGAGGGGACCGCCTTCACCCGACGACCCTCGTTCCCGTCTCCCTGATACCACG
TCAGCATTGACCGGCCACCGGCTTAACCTTCACAATCGTGTTCAGTCTCTCATCCGCGCC
GGGGATTTGGAATCCGCAGCCGCTGTTGCTCGTCACGCCGTTTTCTCAAATACACGGCCG
ACTGTATTCACGTGTAATGCTATCATCGGTGCTATGTATCGCGCCGGCCGATACAGTGAT
GCTAAGGCTTTGTTTCAGTACTTTTTCAATCAGTATAATATTATTCCTAACGTTGTTTCG
TACAATCATCTCATTGTGTCACATTGTGAAGCTGGTGAAGTTGATGAAGGCTTAAAAGTA
TACAGTCATATTCTTGAAAATGCACCTTTTAGTCCATCTGCTGTGACATATCGTCATCTT
ACTAAAGGATTAATTGATTCGGACCGTATAGCTGAAGCTGTAGATTTGCTTAGGGAAATG
CTTAATAAAGGACACGGTGCAGATTCTCTAGTTTATAACAATTTAATATTAGGGTTCCTG
AATTTGGATAATTTAGAGAAAGCTAATGAGCTGTTTGACGAGTTGAAAGAGAGGTGTACT
GTTTATGATGGGGTGGTGAATGCTACTTTTATGGACTGGTTTTTCAAGCAGGGGAAGGTA
AAAGAGGCGATGGAATCGTATCGATCCCTTCTTGATAAAAAGTATAGGATGGTTCCTGCG
ACTTGTAATGTGCTGTTGGAGGTGTTGTTGAGGCATGGGAGGGAAACGGAGGCGTGGACT
TTGTTTGATGCCATGTTGGATGATCACACACCACCAACGTTCCAGGCTGTGAATTCAGAC
ACTTTTAATTTAATGGTGAATGAGTGTTTTAGGTTAGGGAAGGTTTCAGAGGCCTTGGAG
ACCTTCAAGAAGGTGGGGAAGGGTCTCAAGACCAGACCTTTTGCAATGGACGTTGCGGGT
TACAATAATATGATAACGAGACTTTCTGACCTAGAAATGATGGAGGAAGCAGAAAAATAT
TATATGGAGTTGTGTAACAAGTCATTGAGCCCAGATGTCACAACTTATAGGACAATGATT
GAGGCATATGTGAAGATGGAGAATGTTGAGGGCACGTTGGAGAAATACACGAAGATGGTG
GAAGCAGGGCTGAGAGTCATTCCAATCTATGCTGAAAAATGGTTTAATTTCTTGATTGAG
AAAGGCAAGGTGGCGGAGTGCGTCCCTATTCTGACCAAGATGGGTGAGAGAGAACCAAAG
CCTGATGTCACAACTTATGATATTGTGATTAGGGCACTCTGTGGGGAAGGTAATTATGAT
GCGAGTTCCAATTTAGTAAGTCAGATGATAAACTATGGTGTTGGTCTCACCAGTGCCCTC
AGGGAGTTCCTGTTAGATGCTTATGGTAACCAAGGTCGTCGTGAGGAGATTGAAAGAGTT
TTTGCTACAAAACCGACGTACTTCCCATCTTCTAGATCATCAGGGCCACCTCGAGGACAA
GTTCCATGGCTTTCACAAATACCTAGACAATCAGCAGTAACTTCGCAGGTTCCAGCCCAG
CAGACGTCACCACCTTCTTTTTTCGGGGGACAAGGATCAGCACAAGTGCAAAGTCAGCCT
TCAGCTCGTAACTCATTGTGGCAGCAAAATTCACCTCCCTCTTTCATGGGAGGACAAGGA
TCACCACAAATGCAAAGTGCAGCATATGCTCCTAGCTCCATGTCGCAACAATCTTCATCG
CCTTCTTTCATGGGAGGACAAGGATCATCACAAATGCAAGGCCAGCAGTCAGTGCCTAAT
CCAAGGTGGCAACAAACTTCACCACCCTCTTTTGTTTCTGGACAAGGATCACATCAAATG
CAAGGTCAGCCTTCACCTTTTGCACAAAATCCGCATCAGGCACCATCACCTTCTTTCACT
CAACAAGGAGCTTCACCACCGTCTTTCATGAATGGACAAAGATCACAGCAGATGCAAGGT
CAACAAGGAGCTTCACCACCGTCCTTCATGGATGGACAAAGATCACAGCAGATGCAAGAT
CAGCCATCAGCTTTTGCAAGAAACGTGCAGCAGTCCTCACCACCTTCTTTTGTGCCACAA
CAAGGAGCTCCACCACACTCTTTCATGGCTGGACAAGGATCACTGCAAAGGCAAGGTCAT
CCACCACCTTCATTCATGGCACAACAAGGAGATTCTCACATGCAAGGTCAGCCATCAGGT
TTCACACATGTTCCACAATGGTCATCTCCATCCACTTATATGGCAGGACAAAGAGGAAAC
CATCAAATGCAAGGTCAGCCATCAGGTTTCACACAGACTCCACAAAAGGCGTCACCTTAT
TCCATGGACATACAAAGAGAGTCTGCTCATACTCCACTAAATGAAATCTCACAGGCTTCC
CAATCATTTAGAGGTGCCCTCGAAATGCAAGGTCCAGCATCAGCCTTTACACAAATACCT
AGGCAAAATATAAGTCCTCAAGTAACAGAAGAGGCATCATCCCGAGGGGACAACATTGAG
CAATACCCCCAAGTGACAGGCCAAGGGAGAATGTGA

Peptide Sequence

PEP ID

XP_016446017.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g10270-like isoform X3 [Nicotiana tabacum]
Sequence

MSLYGILLRSLRRSSAAVRPQITPSVYPHPTPQPPPPQNPNFLLPQRSYAFSSAEEAAAE
RRRRKRRLRIEPPINALRRDPLPRGPPSPDDPRSRLPDTTSALTGHRLNLHNRVQSLIRA
GDLESAAAVARHAVFSNTRPTVFTCNAIIGAMYRAGRYSDAKALFQYFFNQYNIIPNVVS
YNHLIVSHCEAGEVDEGLKVYSHILENAPFSPSAVTYRHLTKGLIDSDRIAEAVDLLREM
LNKGHGADSLVYNNLILGFLNLDNLEKANELFDELKERCTVYDGVVNATFMDWFFKQGKV
KEAMESYRSLLDKKYRMVPATCNVLLEVLLRHGRETEAWTLFDAMLDDHTPPTFQAVNSD
TFNLMVNECFRLGKVSEALETFKKVGKGLKTRPFAMDVAGYNNMITRLSDLEMMEEAEKY
YMELCNKSLSPDVTTYRTMIEAYVKMENVEGTLEKYTKMVEAGLRVIPIYAEKWFNFLIE
KGKVAECVPILTKMGEREPKPDVTTYDIVIRALCGEGNYDASSNLVSQMINYGVGLTSAL
REFLLDAYGNQGRREEIERVFATKPTYFPSSRSSGPPRGQVPWLSQIPRQSAVTSQVPAQ
QTSPPSFFGGQGSAQVQSQPSARNSLWQQNSPPSFMGGQGSPQMQSAAYAPSSMSQQSSS
PSFMGGQGSSQMQGQQSVPNPRWQQTSPPSFVSGQGSHQMQGQPSPFAQNPHQAPSPSFT
QQGASPPSFMNGQRSQQMQGQQGASPPSFMDGQRSQQMQDQPSAFARNVQQSSPPSFVPQ
QGAPPHSFMAGQGSLQRQGHPPPSFMAQQGDSHMQGQPSGFTHVPQWSSPSTYMAGQRGN
HQMQGQPSGFTQTPQKASPYSMDIQRESAHTPLNEISQASQSFRGALEMQGPASAFTQIP
RQNISPQVTEEASSRGDNIEQYPQVTGQGRM

Transcript Sequence

Gene sequence data has not been registered.